KEGG   PATHWAY: sand00020
Entry
sand00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sandaracinobacteroides saxicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sand00020  Citrate cycle (TCA cycle)
sand00020

Module
sand_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sand00020]
sand_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sand00020]
sand_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sand00020]
sand_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sand00020]
sand_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sand00020]
Other DBs
GO: 0006099
Organism
Sandaracinobacteroides saxicola [GN:sand]
Gene
H3309_10520  citrate synthase [KO:K01647] [EC:2.3.3.1]
H3309_15640  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
H3309_03695  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H3309_15950  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H3309_15945  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H3309_03380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3309_15930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3309_03900  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H3309_03915  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H3309_15970  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H3309_15975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H3309_10455  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H3309_10430  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H3309_10465  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
H3309_10460  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
H3309_11595  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
H3309_08540  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H3309_16000  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H3309_02660  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
H3309_11850  transketolase [KO:K00163] [EC:1.2.4.1]
H3309_03410  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H3309_03405  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
H3309_03395  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sand00010  Glycolysis / Gluconeogenesis
sand00053  Ascorbate and aldarate metabolism
sand00061  Fatty acid biosynthesis
sand00071  Fatty acid degradation
sand00190  Oxidative phosphorylation
sand00220  Arginine biosynthesis
sand00250  Alanine, aspartate and glutamate metabolism
sand00280  Valine, leucine and isoleucine degradation
sand00350  Tyrosine metabolism
sand00470  D-Amino acid metabolism
sand00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system