KEGG   PATHWAY: sbc00020
Entry
sbc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shigella boydii CDC 3083-94 (serotype 18)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbc00020  Citrate cycle (TCA cycle)
sbc00020

Module
sbc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbc00020]
sbc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbc00020]
sbc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbc00020]
sbc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbc00020]
sbc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbc00020]
Other DBs
GO: 0006099
Organism
Shigella boydii CDC 3083-94 (serotype 18) [GN:sbc]
Gene
SbBS512_E0638  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SbBS512_E0111  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SbBS512_E1315  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SbBS512_E0645  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
SbBS512_E0646  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
SbBS512_E0109  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SbBS512_E0648  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SbBS512_E0647  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
SbBS512_E0642  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SbBS512_E0643  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SbBS512_E0640  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SbBS512_E0641  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SbBS512_E4686  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SbBS512_E4685  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SbBS512_E4684  frdC; fumarate reductase, cytochrome b subunit [KO:K00246]
SbBS512_E4683  frdD; fumarate reductase, D subunit [KO:K00247]
SbBS512_E1798  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SbBS512_E1796  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SbBS512_E1876  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
SbBS512_E3359  mannitol operon repressor [KO:K01774] [EC:4.2.1.2]
SbBS512_E3540  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SbBS512_E0730  mqo; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
SbBS512_E3782  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SbBS512_E0107  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SbBS512_E0108  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SbBS512_E1615  ydbK; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbc00010  Glycolysis / Gluconeogenesis
sbc00053  Ascorbate and aldarate metabolism
sbc00061  Fatty acid biosynthesis
sbc00071  Fatty acid degradation
sbc00190  Oxidative phosphorylation
sbc00220  Arginine biosynthesis
sbc00250  Alanine, aspartate and glutamate metabolism
sbc00280  Valine, leucine and isoleucine degradation
sbc00350  Tyrosine metabolism
sbc00470  D-Amino acid metabolism
sbc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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