KEGG   PATHWAY: sbg00020
Entry
sbg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella bongori NCTC 12419
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbg00020  Citrate cycle (TCA cycle)
sbg00020

Module
sbg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbg00020]
sbg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbg00020]
sbg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbg00020]
sbg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbg00020]
sbg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbg00020]
Other DBs
GO: 0006099
Organism
Salmonella bongori NCTC 12419 [GN:sbg]
Gene
SBG_0624  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SBG_0670  aconitase [KO:K01681] [EC:4.2.1.3]
SBG_1575  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K01681] [EC:4.2.1.3]
SBG_0153  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SBG_1073  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SBG_0630  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SBG_0631  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
SBG_0149  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SBG_0633  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SBG_0632  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SBG_0628  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SBG_0629  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SBG_0626  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SBG_0627  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
SBG_3792  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SBG_3791  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SBG_3790  frdC; fumarate reductase complex subunit C; membrane anchor polypeptide [KO:K00246]
SBG_3789  frdD; fumarate reductase complex subunit D; membrane anchor polypeptide [KO:K00247]
SBG_1295  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SBG_3741  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SBG_1296  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SBG_1227  ydhZ; conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
SBG_2681  putative transcriptional regulatory protein [KO:K01774] [EC:4.2.1.2]
SBG_2978  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SBG_3105  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SBG_0147  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SBG_0148  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
SBG_1488  putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbg00010  Glycolysis / Gluconeogenesis
sbg00053  Ascorbate and aldarate metabolism
sbg00061  Fatty acid biosynthesis
sbg00071  Fatty acid degradation
sbg00190  Oxidative phosphorylation
sbg00220  Arginine biosynthesis
sbg00250  Alanine, aspartate and glutamate metabolism
sbg00280  Valine, leucine and isoleucine degradation
sbg00350  Tyrosine metabolism
sbg00470  D-Amino acid metabolism
sbg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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