KEGG   PATHWAY: sbp00020
Entry
sbp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella baltica OS223
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbp00020  Citrate cycle (TCA cycle)
sbp00020

Module
sbp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbp00020]
sbp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbp00020]
sbp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbp00020]
sbp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbp00020]
sbp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbp00020]
Other DBs
GO: 0006099
Organism
Shewanella baltica OS223 [GN:sbp]
Gene
Sbal223_1831  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Sbal223_3848  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sbal223_1876  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sbal223_2992  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Sbal223_1836  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Sbal223_1837  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Sbal223_3854  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sbal223_1839  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sbal223_1838  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Sbal223_1834  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sbal223_1835  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Sbal223_1832  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Sbal223_1833  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Sbal223_0637  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal223_3883  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal223_0636  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal223_3882  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal223_3884  fumarate reductase respiratory complex transmembrane subunit [KO:K25996]
Sbal223_3885  fumarate reductase respiratory complex transmembrane subunit [KO:K25996]
Sbal223_0638  fumarate reductase respiratory complex transmembrane subunit [KO:K25996]
Sbal223_3433  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Sbal223_2375  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Sbal223_0542  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Sbal223_3627  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Sbal223_0148  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sbal223_3856  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Sbal223_3855  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbp00010  Glycolysis / Gluconeogenesis
sbp00053  Ascorbate and aldarate metabolism
sbp00061  Fatty acid biosynthesis
sbp00071  Fatty acid degradation
sbp00190  Oxidative phosphorylation
sbp00220  Arginine biosynthesis
sbp00250  Alanine, aspartate and glutamate metabolism
sbp00280  Valine, leucine and isoleucine degradation
sbp00350  Tyrosine metabolism
sbp00470  D-Amino acid metabolism
sbp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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