KEGG   PATHWAY: sbs00020
Entry
sbs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella baltica OS117
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbs00020  Citrate cycle (TCA cycle)
sbs00020

Module
sbs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbs00020]
sbs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbs00020]
sbs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbs00020]
sbs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbs00020]
sbs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbs00020]
Other DBs
GO: 0006099
Organism
Shewanella baltica OS117 [GN:sbs]
Gene
Sbal117_2657  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Sbal117_4064  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sbal117_2611  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sbal117_1475  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Sbal117_2652  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Sbal117_2651  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Sbal117_4070  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sbal117_2649  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sbal117_2650  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Sbal117_2654  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sbal117_2653  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Sbal117_2656  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Sbal117_2655  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Sbal117_3904  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal117_4094  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal117_3905  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal117_4093  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal117_4096  Fumarate reductase respiratory complex [KO:K25996]
Sbal117_3903  Fumarate reductase respiratory complex [KO:K25996]
Sbal117_4095  Fumarate reductase respiratory complex [KO:K25996]
Sbal117_0955  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Sbal117_2037  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Sbal117_3958  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Sbal117_0746  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sbal117_4379  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sbal117_4072  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Sbal117_4071  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbs00010  Glycolysis / Gluconeogenesis
sbs00053  Ascorbate and aldarate metabolism
sbs00061  Fatty acid biosynthesis
sbs00071  Fatty acid degradation
sbs00190  Oxidative phosphorylation
sbs00220  Arginine biosynthesis
sbs00250  Alanine, aspartate and glutamate metabolism
sbs00280  Valine, leucine and isoleucine degradation
sbs00350  Tyrosine metabolism
sbs00470  D-Amino acid metabolism
sbs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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