KEGG   PATHWAY: scad00020
Entry
scad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces cadmiisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scad00020  Citrate cycle (TCA cycle)
scad00020

Module
scad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scad00020]
scad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scad00020]
scad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scad00020]
scad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scad00020]
scad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scad00020]
Other DBs
GO: 0006099
Organism
Streptomyces cadmiisoli [GN:scad]
Gene
DN051_04010  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
DN051_11345  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DN051_11350  citrate synthase [KO:K01647] [EC:2.3.3.1]
DN051_22025  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
DN051_24845  citrate synthase [KO:K01647] [EC:2.3.3.1]
DN051_10890  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DN051_08030  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DN051_14020  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DN051_09695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DN051_27485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DN051_17185  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DN051_17190  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DN051_09150  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DN051_16345  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DN051_09155  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DN051_16350  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DN051_06850  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DN051_07955  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
DN051_14855  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DN051_16115  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DN051_37795  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
DN051_06845  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DN051_14860  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DN051_16120  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DN051_06855  succinate dehydrogenase [KO:K00241]
DN051_16105  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DN051_16110  succinate dehydrogenase [KO:K00242]
DN051_15020  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DN051_15055  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DN051_16285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DN051_05335  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DN051_15370  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DN051_01870  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
DN051_07930  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DN051_26540  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DN051_27470  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DN051_35875  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DN051_38250  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
DN051_03635  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DN051_07935  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
DN051_27480  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scad00010  Glycolysis / Gluconeogenesis
scad00053  Ascorbate and aldarate metabolism
scad00061  Fatty acid biosynthesis
scad00071  Fatty acid degradation
scad00190  Oxidative phosphorylation
scad00220  Arginine biosynthesis
scad00250  Alanine, aspartate and glutamate metabolism
scad00280  Valine, leucine and isoleucine degradation
scad00350  Tyrosine metabolism
scad00470  D-Amino acid metabolism
scad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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