KEGG   PATHWAY: schg00020
Entry
schg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces changanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
schg00020  Citrate cycle (TCA cycle)
schg00020

Module
schg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:schg00020]
schg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:schg00020]
schg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:schg00020]
schg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:schg00020]
schg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:schg00020]
Other DBs
GO: 0006099
Organism
Streptomyces changanensis [GN:schg]
Gene
NRO40_10065  citrate synthase [KO:K01647] [EC:2.3.3.1]
NRO40_13030  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NRO40_23445  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NRO40_26595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NRO40_20260  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NRO40_07520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NRO40_15235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NRO40_17655  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NRO40_17650  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NRO40_18400  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NRO40_18395  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NRO40_18615  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NRO40_27210  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NRO40_18610  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NRO40_27215  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NRO40_18625  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NRO40_27205  succinate dehydrogenase cytochrome b subunit [KO:K00241]
NRO40_18620  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NRO40_19345  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NRO40_19335  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NRO40_18475  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NRO40_19090  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
NRO40_07535  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NRO40_08585  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NRO40_07525  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
schg00010  Glycolysis / Gluconeogenesis
schg00053  Ascorbate and aldarate metabolism
schg00061  Fatty acid biosynthesis
schg00071  Fatty acid degradation
schg00190  Oxidative phosphorylation
schg00220  Arginine biosynthesis
schg00250  Alanine, aspartate and glutamate metabolism
schg00280  Valine, leucine and isoleucine degradation
schg00350  Tyrosine metabolism
schg00470  D-Amino acid metabolism
schg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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