KEGG   PATHWAY: schk00630
Entry
schk00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella chilikensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
schk00630  Glyoxylate and dicarboxylate metabolism
schk00630

Module
schk_M00012  Glyoxylate cycle [PATH:schk00630]
schk_M00621  Glycine cleavage system [PATH:schk00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella chilikensis [GN:schk]
Gene
GII14_08310  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
GII14_10125  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GII14_08305  malate synthase A [KO:K01638] [EC:2.3.3.9]
GII14_04480  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GII14_08665  citrate synthase [KO:K01647] [EC:2.3.3.1]
GII14_19800  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
GII14_17950  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GII14_02125  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GII14_09020  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GII14_08170  catalase [KO:K03781] [EC:1.11.1.6]
GII14_17840  catalase [KO:K03781] [EC:1.11.1.6]
GII14_02545  catalase [KO:K03781] [EC:1.11.1.6]
GII14_16970  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
GII14_01375  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
GII14_12690  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GII14_20090  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
GII14_16555  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
GII14_20555  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GII14_06905  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GII14_04035  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GII14_04025  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GII14_02100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GII14_04030  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GII14_10245  NAD-binding protein [KO:K00042] [EC:1.1.1.60]
GII14_14315  glycerate kinase [KO:K00865] [EC:2.7.1.165]
GII14_12440  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GII14_18055  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
GII14_21400  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
GII14_21420  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
GII14_02395  fdxH; formate dehydrogenase subunit beta [KO:K00124]
GII14_21395  4Fe-4S dicluster domain-containing protein [KO:K00124]
GII14_21415  4Fe-4S dicluster domain-containing protein [KO:K00124]
GII14_01490  formate dehydrogenase subunit gamma [KO:K00127]
GII14_02400  formate dehydrogenase subunit gamma [KO:K00127]
GII14_19205  formate dehydrogenase [KO:K00127]
GII14_21390  formate dehydrogenase subunit gamma [KO:K00127]
GII14_21410  formate dehydrogenase subunit gamma [KO:K00127]
GII14_15480  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
schk00010  Glycolysis / Gluconeogenesis
schk00020  Citrate cycle (TCA cycle)
schk00030  Pentose phosphate pathway
schk00053  Ascorbate and aldarate metabolism
schk00071  Fatty acid degradation
schk00230  Purine metabolism
schk00250  Alanine, aspartate and glutamate metabolism
schk00260  Glycine, serine and threonine metabolism
schk00620  Pyruvate metabolism
schk00710  Carbon fixation by Calvin cycle
schk00750  Vitamin B6 metabolism
schk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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