KEGG   PATHWAY: schv00020
Entry
schv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Sumerlaea chitinivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
schv00020  Citrate cycle (TCA cycle)
schv00020

Module
schv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:schv00020]
schv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:schv00020]
schv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:schv00020]
schv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:schv00020]
Other DBs
GO: 0006099
Organism
Candidatus Sumerlaea chitinivorans [GN:schv]
Gene
BRCON_0447  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BRCON_1664  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BRCON_1006  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BRCON_1423  Isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
BRCON_2081  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
BRCON_2273  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BRCON_2270  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BRCON_1963  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRCON_0565  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BRCON_2548  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BRCON_0564  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BRCON_2549  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BRCON_2108  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BRCON_0743  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BRCON_1396  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BRCON_0509  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BRCON_0021  CoB--CoM heterodisulfide reductase subunit B [KO:K00241]
BRCON_0589  Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BRCON_2446  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BRCON_1620  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BRCON_0256  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BRCON_1481  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BRCON_0716  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BRCON_1480  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BRCON_0448  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
schv00010  Glycolysis / Gluconeogenesis
schv00053  Ascorbate and aldarate metabolism
schv00061  Fatty acid biosynthesis
schv00071  Fatty acid degradation
schv00190  Oxidative phosphorylation
schv00220  Arginine biosynthesis
schv00250  Alanine, aspartate and glutamate metabolism
schv00280  Valine, leucine and isoleucine degradation
schv00350  Tyrosine metabolism
schv00470  D-Amino acid metabolism
schv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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