KEGG   PATHWAY: sdec00020
Entry
sdec00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces deccanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdec00020  Citrate cycle (TCA cycle)
sdec00020

Module
sdec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sdec00020]
sdec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sdec00020]
sdec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sdec00020]
sdec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sdec00020]
sdec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sdec00020]
Other DBs
GO: 0006099
Organism
Streptomyces deccanensis [GN:sdec]
Gene
L3078_16395  citrate synthase [KO:K01647] [EC:2.3.3.1]
L3078_20100  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
L3078_35035  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
L3078_39540  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L3078_30890  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
L3078_00515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L3078_12790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L3078_27800  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L3078_27795  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L3078_38120  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L3078_28715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L3078_38115  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L3078_28710  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L3078_39770  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L3078_28980  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L3078_29985  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L3078_39775  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L3078_28975  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L3078_29980  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L3078_39765  succinate dehydrogenase [KO:K00241]
L3078_28990  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
L3078_28985  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
L3078_29840  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
L3078_29835  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L3078_28800  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L3078_05530  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
L3078_29545  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
L3078_12805  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L3078_14060  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L3078_00755  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
L3078_01165  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
L3078_12795  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sdec00010  Glycolysis / Gluconeogenesis
sdec00053  Ascorbate and aldarate metabolism
sdec00061  Fatty acid biosynthesis
sdec00071  Fatty acid degradation
sdec00190  Oxidative phosphorylation
sdec00220  Arginine biosynthesis
sdec00250  Alanine, aspartate and glutamate metabolism
sdec00280  Valine, leucine and isoleucine degradation
sdec00350  Tyrosine metabolism
sdec00470  D-Amino acid metabolism
sdec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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