KEGG   PATHWAY: sdul00020
Entry
sdul00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Solanum dulcamara (climbing nightshade)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sdul00020  Citrate cycle (TCA cycle)
sdul00020

Module
sdul_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sdul00020]
sdul_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sdul00020]
sdul_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sdul00020]
Other DBs
GO: 0006099
Organism
Solanum dulcamara (climbing nightshade) [GN:sdul]
Gene
129886896  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
129870297  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
129893225  citrate synthase 3, peroxisomal-like isoform X1 [KO:K01647] [EC:2.3.3.1]
129886050  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
129887360  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
129880353  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
129883590  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
129870042  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
129891720  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
129891762  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
129887863  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
129873800  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
129896315  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
129899967  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
129880381  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
129873057  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
129898587  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
129876164  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
129870110  uncharacterized protein LOC129870110 [KO:K00164] [EC:1.2.4.2]
129881029  uncharacterized protein LOC129881029 [KO:K00164] [EC:1.2.4.2]
129870365  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
129892254  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
129886097  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
129880918  dihydrolipoyl dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
129880934  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
129883518  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
129887925  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129873228  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129899178  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129872390  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
129887410  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
129874988  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
129900565  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
129882973  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
129883139  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
129884785  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
129885677  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
129892169  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
129870655  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
129893101  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
129873375  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
129883212  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
129896303  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
129889808  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
129904017  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
129870551  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
129870812  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
129880264  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
129892548  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
129899597  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
129889030  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
129869996  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
129896659  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
129899582  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
129902512  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
129879968  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
129891639  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
129895451  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sdul00010  Glycolysis / Gluconeogenesis
sdul00053  Ascorbate and aldarate metabolism
sdul00061  Fatty acid biosynthesis
sdul00062  Fatty acid elongation
sdul00071  Fatty acid degradation
sdul00190  Oxidative phosphorylation
sdul00220  Arginine biosynthesis
sdul00250  Alanine, aspartate and glutamate metabolism
sdul00280  Valine, leucine and isoleucine degradation
sdul00350  Tyrosine metabolism
sdul00470  D-Amino acid metabolism
sdul00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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