KEGG   PATHWAY: sef00020
Entry
sef00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium 798
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sef00020  Citrate cycle (TCA cycle)
sef00020

Module
sef_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sef00020]
sef_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sef00020]
sef_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sef00020]
sef_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sef00020]
sef_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sef00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium 798 [GN:sef]
Gene
UMN798_0790  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
UMN798_1801  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K01681] [EC:4.2.1.3]
UMN798_0177  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UMN798_1286  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UMN798_0795  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
UMN798_0796  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
UMN798_0171  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
UMN798_0798  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
UMN798_0797  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
UMN798_0793  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UMN798_0794  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
UMN798_0791  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
UMN798_0792  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
UMN798_4705  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
UMN798_4704  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
UMN798_4703  frdC; fumarate reductase complex subunit C, membrane anchor polypeptide [KO:K00246]
UMN798_4702  frdD; fumarate reductase complex subunit D, membrane anchor polypeptide [KO:K00247]
UMN798_1526  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
UMN798_4660  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
UMN798_0826  putative hydro-lyase [KO:K01677] [EC:4.2.1.2]
UMN798_0825  putative hydro-lyase [KO:K01678] [EC:4.2.1.2]
UMN798_1527  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
UMN798_1446  hypothetical protein [KO:K01675] [EC:4.2.1.2]
UMN798_3652  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UMN798_3802  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
UMN798_0169  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
UMN798_0170  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
UMN798_1731  putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sef00010  Glycolysis / Gluconeogenesis
sef00053  Ascorbate and aldarate metabolism
sef00061  Fatty acid biosynthesis
sef00071  Fatty acid degradation
sef00190  Oxidative phosphorylation
sef00220  Arginine biosynthesis
sef00250  Alanine, aspartate and glutamate metabolism
sef00280  Valine, leucine and isoleucine degradation
sef00350  Tyrosine metabolism
sef00470  D-Amino acid metabolism
sef00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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