KEGG   PATHWAY: sei00020
Entry
sei00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Paratyphi C
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sei00020  Citrate cycle (TCA cycle)
sei00020

Module
sei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sei00020]
sei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sei00020]
sei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sei00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Paratyphi C [GN:sei]
Gene
SPC_0727  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SPC_2019  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SPC_0170  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SPC_2506  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SPC_0733  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SPC_0734  sucB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
SPC_0736  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
SPC_0735  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SPC_0731  sdhA; succinate dehydrogenase catalytic subunit [KO:K00239] [EC:1.3.5.1]
SPC_0732  sdhB; succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
SPC_0729  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
SPC_0730  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
SPC_4493  frdA; fumarate reductase [KO:K00244] [EC:1.3.5.1]
SPC_4492  frdB; succinate dehydrogenase [KO:K00245] [EC:1.3.5.1]
SPC_4491  frdC; fumarate reductase subunit C [KO:K00246]
SPC_4490  frdD; fumarate reductase subunit D [KO:K00247]
SPC_2263  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SPC_4363  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SPC_0758  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SPC_0757  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
SPC_2262  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SPC_2341  ydhZ; hypothetical protein [KO:K01675] [EC:4.2.1.2]
SPC_3429  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SPC_3569  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SPC_0163  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SPC_0164  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SPC_2084  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sei00010  Glycolysis / Gluconeogenesis
sei00053  Ascorbate and aldarate metabolism
sei00061  Fatty acid biosynthesis
sei00071  Fatty acid degradation
sei00190  Oxidative phosphorylation
sei00220  Arginine biosynthesis
sei00250  Alanine, aspartate and glutamate metabolism
sei00280  Valine, leucine and isoleucine degradation
sei00350  Tyrosine metabolism
sei00470  D-Amino acid metabolism
sei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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