KEGG   PATHWAY: send00020
Entry
send00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium DT104
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
send00020  Citrate cycle (TCA cycle)
send00020

Module
send_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:send00020]
send_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:send00020]
send_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:send00020]
send_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:send00020]
send_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:send00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium DT104 [GN:send]
Gene
DT104_07521  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DT104_16821  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K01681] [EC:4.2.1.3]
DT104_01631  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DT104_12181  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DT104_07581  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DT104_07591  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
DT104_01591  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DT104_07611  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
DT104_07601  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
DT104_07561  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DT104_07571  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
DT104_07541  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
DT104_07551  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
DT104_43351  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DT104_43341  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
DT104_43331  frdC; fumarate reductase complex subunit C; membrane anchor polypeptide [KO:K00246]
DT104_43321  frdD; fumarate reductase complex subunit D; membrane anchor polypeptide [KO:K00247]
DT104_14391  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
DT104_42951  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
DT104_07791  putative hydro-lyase [KO:K01677] [EC:4.2.1.2]
DT104_07781  putative hydro-lyase [KO:K01678] [EC:4.2.1.2]
DT104_14411  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DT104_13651  pathogenicity island protein [KO:K01675] [EC:4.2.1.2]
DT104_33511  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DT104_34841  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DT104_01571  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DT104_01581  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
DT104_16221  probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
send00010  Glycolysis / Gluconeogenesis
send00053  Ascorbate and aldarate metabolism
send00061  Fatty acid biosynthesis
send00071  Fatty acid degradation
send00190  Oxidative phosphorylation
send00220  Arginine biosynthesis
send00250  Alanine, aspartate and glutamate metabolism
send00280  Valine, leucine and isoleucine degradation
send00350  Tyrosine metabolism
send00470  D-Amino acid metabolism
send00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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