KEGG   PATHWAY: senh00020
Entry
senh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
senh00020  Citrate cycle (TCA cycle)
senh00020

Module
senh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:senh00020]
senh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:senh00020]
senh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:senh00020]
senh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:senh00020]
senh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:senh00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069 [GN:senh]
Gene
CFSAN002069_05190  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CFSAN002069_00395  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFSAN002069_08425  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFSAN002069_02820  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFSAN002069_05165  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
CFSAN002069_05160  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CFSAN002069_08450  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFSAN002069_05150  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CFSAN002069_05155  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CFSAN002069_05175  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFSAN002069_05170  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFSAN002069_05185  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
CFSAN002069_05180  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
CFSAN002069_10370  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CFSAN002069_10375  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CFSAN002069_10380  fumarate reductase subunit C [KO:K00246]
CFSAN002069_10385  fumarate reductase subunit D [KO:K00247]
CFSAN002069_10580  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CFSAN002069_01665  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CFSAN002069_05030  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CFSAN002069_05035  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CFSAN002069_01660  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CFSAN002069_02060  hypothetical protein [KO:K01675] [EC:4.2.1.2]
CFSAN002069_15375  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFSAN002069_14675  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CFSAN002069_08460  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CFSAN002069_08455  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CFSAN002069_00710  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
senh00010  Glycolysis / Gluconeogenesis
senh00053  Ascorbate and aldarate metabolism
senh00061  Fatty acid biosynthesis
senh00071  Fatty acid degradation
senh00190  Oxidative phosphorylation
senh00220  Arginine biosynthesis
senh00250  Alanine, aspartate and glutamate metabolism
senh00280  Valine, leucine and isoleucine degradation
senh00350  Tyrosine metabolism
senh00470  D-Amino acid metabolism
senh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system