KEGG   PATHWAY: senp00020
Entry
senp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia entomophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
senp00020  Citrate cycle (TCA cycle)
senp00020

Module
senp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:senp00020]
senp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:senp00020]
senp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:senp00020]
senp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:senp00020]
senp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:senp00020]
Other DBs
GO: 0006099
Organism
Serratia entomophila [GN:senp]
Gene
KHA73_06515  citrate synthase [KO:K01647] [EC:2.3.3.1]
KHA73_13115  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KHA73_20125  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KHA73_10355  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KHA73_06540  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KHA73_06545  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KHA73_20130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KHA73_23815  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KHA73_06555  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KHA73_06550  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KHA73_06530  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KHA73_06535  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KHA73_06520  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
KHA73_06525  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
KHA73_01510  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KHA73_01505  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KHA73_01500  frdC; fumarate reductase subunit FrdC [KO:K00246]
KHA73_01495  frdD; fumarate reductase subunit FrdD [KO:K00247]
KHA73_20185  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KHA73_11515  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KHA73_01775  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KHA73_07825  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KHA73_00655  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KHA73_10640  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KHA73_20140  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KHA73_20135  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KHA73_12860  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
senp00010  Glycolysis / Gluconeogenesis
senp00053  Ascorbate and aldarate metabolism
senp00061  Fatty acid biosynthesis
senp00071  Fatty acid degradation
senp00190  Oxidative phosphorylation
senp00220  Arginine biosynthesis
senp00250  Alanine, aspartate and glutamate metabolism
senp00280  Valine, leucine and isoleucine degradation
senp00350  Tyrosine metabolism
senp00470  D-Amino acid metabolism
senp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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