KEGG   PATHWAY: sens00020
Entry
sens00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Agona 24249
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sens00020  Citrate cycle (TCA cycle)
sens00020

Module
sens_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sens00020]
sens_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sens00020]
sens_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sens00020]
sens_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sens00020]
sens_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sens00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Agona 24249 [GN:sens]
Gene
Q786_03535  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Q786_06635  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Q786_00805  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q786_09070  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q786_03560  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
Q786_03565  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Q786_00780  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q786_03575  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q786_03570  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q786_03550  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q786_03555  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q786_03540  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
Q786_03545  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
Q786_21380  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Q786_21375  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
Q786_21370  fumarate reductase subunit C [KO:K00246]
Q786_21365  fumarate reductase subunit D [KO:K00247]
Q786_07910  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Q786_21115  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Q786_03695  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
Q786_03690  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
Q786_07905  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q786_08315  hypothetical protein [KO:K01675] [EC:4.2.1.2]
Q786_16380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q786_17085  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Q786_00770  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Q786_00775  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Q786_06950  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sens00010  Glycolysis / Gluconeogenesis
sens00053  Ascorbate and aldarate metabolism
sens00061  Fatty acid biosynthesis
sens00071  Fatty acid degradation
sens00190  Oxidative phosphorylation
sens00220  Arginine biosynthesis
sens00250  Alanine, aspartate and glutamate metabolism
sens00280  Valine, leucine and isoleucine degradation
sens00350  Tyrosine metabolism
sens00470  D-Amino acid metabolism
sens00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system