KEGG   PATHWAY: serf00020
Entry
serf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia sp. FS14
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
serf00020  Citrate cycle (TCA cycle)
serf00020

Module
serf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:serf00020]
serf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:serf00020]
serf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:serf00020]
serf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:serf00020]
serf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:serf00020]
Other DBs
GO: 0006099
Organism
Serratia sp. FS14 [GN:serf]
Gene
L085_22315  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
L085_15475  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L085_07940  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L085_18485  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L085_22290  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L085_22285  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
L085_03805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
L085_07935  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
L085_22275  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
L085_22280  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
L085_22300  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L085_22295  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L085_22310  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
L085_22305  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
L085_02285  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
L085_02290  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
L085_02295  fumarate reductase subunit C [KO:K00246]
L085_02300  fumarate reductase subunit D [KO:K00247]
L085_07880  tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit [KO:K01676] [EC:4.2.1.2]
L085_17300  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L085_06315  hypothetical protein [KO:K00024] [EC:1.1.1.37]
L085_02030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L085_20935  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
L085_18205  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
L085_03120  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
L085_13645  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
L085_07925  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
L085_07930  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
L085_15735  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
serf00010  Glycolysis / Gluconeogenesis
serf00053  Ascorbate and aldarate metabolism
serf00061  Fatty acid biosynthesis
serf00071  Fatty acid degradation
serf00190  Oxidative phosphorylation
serf00220  Arginine biosynthesis
serf00250  Alanine, aspartate and glutamate metabolism
serf00280  Valine, leucine and isoleucine degradation
serf00350  Tyrosine metabolism
serf00470  D-Amino acid metabolism
serf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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