KEGG   PATHWAY: sew00020
Entry
sew00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Schwarzengrund
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sew00020  Citrate cycle (TCA cycle)
sew00020

Module
sew_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sew00020]
sew_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sew00020]
sew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sew00020]
sew_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sew00020]
sew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sew00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Schwarzengrund [GN:sew]
Gene
SeSA_A0887  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SeSA_A1841  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SeSA_A0178  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SeSA_A1317  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SeSA_A0892  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
SeSA_A0893  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
SeSA_A0173  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SeSA_A0895  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SeSA_A0894  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
SeSA_A0890  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SeSA_A0891  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SeSA_A0888  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SeSA_A0889  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SeSA_A4613  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SeSA_A4612  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SeSA_A4611  frdC; fumarate reductase, cytochrome b subunit [KO:K00246]
SeSA_A4610  fumarate reductase subunit D [KO:K00247]
SeSA_A1567  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SeSA_A4555  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SeSA_A1568  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SeSA_A1485  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
SeSA_A3250  mannitol operon repressor [KO:K01774] [EC:4.2.1.2]
SeSA_A3551  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SeSA_A3698  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SeSA_A0171  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SeSA_A0172  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SeSA_A1770  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sew00010  Glycolysis / Gluconeogenesis
sew00053  Ascorbate and aldarate metabolism
sew00061  Fatty acid biosynthesis
sew00071  Fatty acid degradation
sew00190  Oxidative phosphorylation
sew00220  Arginine biosynthesis
sew00250  Alanine, aspartate and glutamate metabolism
sew00280  Valine, leucine and isoleucine degradation
sew00350  Tyrosine metabolism
sew00470  D-Amino acid metabolism
sew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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