KEGG   PATHWAY: sfd00010
Entry
sfd00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Sinorhizobium fredii USDA 257
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfd00010  Glycolysis / Gluconeogenesis
sfd00010

Module
sfd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sfd00010]
sfd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfd00010]
sfd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfd00010]
Other DBs
GO: 0006096 0006094
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c59860  glk; glucokinase Glk [KO:K00845] [EC:2.7.1.2]
USDA257_c01120  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
USDA257_c45140  pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pfp [KO:K00895] [EC:2.7.1.90]
USDA257_c31190  fbp; fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
USDA257_c52310  putative fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
USDA257_c18810  deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K11645] [EC:4.1.2.13]
USDA257_c10630  fba; fructose-bisphosphate aldolase Fba [KO:K01624] [EC:4.1.2.13]
USDA257_c31160  cbbA; fructose-bisphosphate aldolase CbbA [KO:K01624] [EC:4.1.2.13]
USDA257_c18590  tpiA2; triosephosphate isomerase TpiA [KO:K01803] [EC:5.3.1.1]
USDA257_c34740  tpiA3; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
USDA257_c52280  gap; glyceraldehyde-3-phosphate dehydrogenase Gap [KO:K00134] [EC:1.2.1.12]
USDA257_c52300  pgk; phosphoglycerate kinase Pgk [KO:K00927] [EC:2.7.2.3]
USDA257_c59890  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
USDA257_c34790  eno; enolase Eno [KO:K01689] [EC:4.2.1.11]
USDA257_c52570  pyk; pyruvate kinase Pyk [KO:K00873] [EC:2.7.1.40]
USDA257_c06580  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
USDA257_c19150  pdhA1; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
USDA257_c34810  pdhA2; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
USDA257_c34820  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
USDA257_c18880  pdhC1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
USDA257_c17940  acoC1; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
USDA257_c18040  acoC2; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
USDA257_c18140  acoC3; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
USDA257_c34830  pdhC2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
USDA257_c18870  lpdA1; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c34860  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
USDA257_c31420  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
USDA257_c54080  lpdV; dihydrolipoyl dehydrogenase LpdV [KO:K00382] [EC:1.8.1.4]
USDA257_c55720  lpd; dihydrolipoyl dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
USDA257_c26150  adhI1; alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
USDA257_c30920  adhI2; alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
USDA257_c54280  adhI3; alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
USDA257_c38320  adhA; alcohol dehydrogenase AdhA [KO:K13953] [EC:1.1.1.1]
USDA257_c06990  adhT; alcohol dehydrogenase AdhT [KO:K00001] [EC:1.1.1.1]
USDA257_c42170  alcohol dehydrogenase protein [KO:K00001] [EC:1.1.1.1]
USDA257_c50970  adhC2; NADP-dependent alcohol dehydrogenase C 2 [KO:K13979] [EC:1.1.1.2]
USDA257_c26010  exaA; quinoprotein ethanol dehydrogenase ExaA [KO:K00114] [EC:1.1.2.8]
USDA257_c10000  dhaS1; putative aldehyde dehydrogenase DhaS [KO:K00128] [EC:1.2.1.3]
USDA257_c20490  putative aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
USDA257_c29990  dhaS4; putative aldehyde dehydrogenase DhaS [KO:K00128] [EC:1.2.1.3]
USDA257_c49670  putative aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
USDA257_c46810  acoD; acetaldehyde dehydrogenase 2 [KO:K00138] [EC:1.2.1.-]
USDA257_c50400  ytcI; putative acyl--CoA ligase YtcI [KO:K01895] [EC:6.2.1.1]
USDA257_c58430  acsA2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
USDA257_c25600  hypothetical protein [KO:K01785] [EC:5.1.3.3]
USDA257_c53150  pgm; phosphoglucomutase Pgm [KO:K01835] [EC:5.4.2.2]
USDA257_c11080  algC; phosphomannomutase/phosphoglucomutase AlgC [KO:K15778] [EC:5.4.2.8 5.4.2.2]
USDA257_c59080  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfd00020  Citrate cycle (TCA cycle)
sfd00030  Pentose phosphate pathway
sfd00500  Starch and sucrose metabolism
sfd00620  Pyruvate metabolism
sfd00640  Propanoate metabolism
sfd00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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