KEGG   PATHWAY: sfd00030
Entry
sfd00030                    Pathway                                
Name
Pentose phosphate pathway - Sinorhizobium fredii USDA 257
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfd00030  Pentose phosphate pathway
sfd00030

Module
sfd_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sfd00030]
sfd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sfd00030]
sfd_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sfd00030]
sfd_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sfd00030]
sfd_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sfd00030]
Other DBs
GO: 0006098
Organism
Sinorhizobium fredii USDA 257 [GN:sfd]
Gene
USDA257_c00550  rbsK1; ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
USDA257_c01120  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
USDA257_c03520  edd; phosphogluconate dehydratase Edd [KO:K01690] [EC:4.2.1.12]
USDA257_c03530  pgl; 6-phosphogluconolactonase Pgl [KO:K01057] [EC:3.1.1.31]
USDA257_c03540  zwf; glucose-6-phosphate 1-dehydrogenase Zwf [KO:K00036] [EC:1.1.1.49 1.1.1.363]
USDA257_c07100  gdh; quinoprotein glucose dehydrogenase Gdh [KO:K00117] [EC:1.1.5.2]
USDA257_c09990  deoC; deoxyribose-phosphate aldolase DeoC [KO:K01619] [EC:4.1.2.4]
USDA257_c10020  rbsK2; ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
USDA257_c10410  phnN1; ribose 1,5-bisphosphate phosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
USDA257_c10630  fba; fructose-bisphosphate aldolase Fba [KO:K01624] [EC:4.1.2.13]
USDA257_c11080  algC; phosphomannomutase/phosphoglucomutase AlgC [KO:K15778] [EC:5.4.2.8 5.4.2.2]
USDA257_c14830  [KO:K00615] [EC:2.2.1.1]
USDA257_c14840  [KO:K00615] [EC:2.2.1.1]
USDA257_c15080  ttuD1; putative hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
USDA257_c18570  tal1; putative transaldolase Tal [KO:K00616] [EC:2.2.1.2]
USDA257_c18580  tktA; transketolase TktA [KO:K00615] [EC:2.2.1.1]
USDA257_c18640  [KO:K00615] [EC:2.2.1.1]
USDA257_c18650  [KO:K00615] [EC:2.2.1.1]
USDA257_c18700  rbsK3; ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
USDA257_c18810  [KO:K11645] [EC:4.1.2.13]
USDA257_c21120  [KO:K01621] [EC:4.1.2.9 4.1.2.22]
USDA257_c24480  [KO:K00852] [EC:2.7.1.15]
USDA257_c24740  gnl1; gluconolactonase Gnl [KO:K01053] [EC:3.1.1.17]
USDA257_c25050  idnK; thermosensitive gluconokinase IdnK [KO:K00851] [EC:2.7.1.12]
USDA257_c25090  gnl2; gluconolactonase Gnl [KO:K01053] [EC:3.1.1.17]
USDA257_c31120  cbbE1; ribulose-phosphate 3-epimerase CbbE [KO:K01783] [EC:5.1.3.1]
USDA257_c31160  cbbA; fructose-bisphosphate aldolase CbbA [KO:K01624] [EC:4.1.2.13]
USDA257_c31170  cbbT1; transketolase CbbT [KO:K00615] [EC:2.2.1.1]
USDA257_c31190  fbp; fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
USDA257_c37800  cbbE2; ribulose-phosphate 3-epimerase CbbE [KO:K01783] [EC:5.1.3.1]
USDA257_c39680  [KO:K01621] [EC:4.1.2.9 4.1.2.22]
USDA257_c41280  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
USDA257_c42090  yqjI; 6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
USDA257_c45140  pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pfp [KO:K00895] [EC:2.7.1.90]
USDA257_c46780  prs; ribose-phosphate pyrophosphokinase Prs [KO:K00948] [EC:2.7.6.1]
USDA257_c47370  kdgK; 2-dehydro-3-deoxygluconokinase KdgK [KO:K00874] [EC:2.7.1.45]
USDA257_c48330  fabG11; 3-oxoacyl-[acyl-carrier-protein] reductase FabG [KO:K00034] [EC:1.1.1.47]
USDA257_c52270  cbbT2; transketolase CbbT [KO:K00615] [EC:2.2.1.1]
USDA257_c52310  [KO:K01623] [EC:4.1.2.13]
USDA257_c53150  pgm; phosphoglucomutase Pgm [KO:K01835] [EC:5.4.2.2]
USDA257_c53500  eda; 2-dehydro-3-deoxy-phosphogluconate aldolase Eda [KO:K01625] [EC:4.1.2.14 4.1.3.42]
USDA257_c55660  tal2; putative transaldolase Tal [KO:K00616] [EC:2.2.1.2]
USDA257_c58080  ttuD2; putative hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
USDA257_c59610  deoB; phosphopentomutase DeoB [KO:K01839] [EC:5.4.2.7]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sfd00010  Glycolysis / Gluconeogenesis
sfd00040  Pentose and glucuronate interconversions
sfd00052  Galactose metabolism
sfd00230  Purine metabolism
sfd00240  Pyrimidine metabolism
sfd00340  Histidine metabolism
sfd00630  Glyoxylate and dicarboxylate metabolism
sfd00750  Vitamin B6 metabolism
KO pathway
ko00030   

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