KEGG   PATHWAY: sfg00020
Entry
sfg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia fonticola GS2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfg00020  Citrate cycle (TCA cycle)
sfg00020

Module
sfg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfg00020]
sfg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfg00020]
sfg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfg00020]
sfg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfg00020]
sfg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfg00020]
Other DBs
GO: 0006099
Organism
Serratia fonticola GS2 [GN:sfg]
Gene
AV650_11230  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AV650_17830  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AV650_25605  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AV650_14935  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AV650_11255  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AV650_11260  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AV650_04035  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AV650_25610  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AV650_11270  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AV650_11265  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AV650_11245  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AV650_11250  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AV650_11235  succinate dehydrogenase [KO:K00241]
AV650_11240  sdhD; succinate dehydrogenase [KO:K00242]
AV650_05545  fumarate reductase [KO:K00244] [EC:1.3.5.1]
AV650_05540  fumarate reductase [KO:K00245] [EC:1.3.5.1]
AV650_05535  fumarate reductase [KO:K00246]
AV650_05530  fumarate reductase [KO:K00247]
AV650_25665  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AV650_16335  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AV650_05855  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AV650_04685  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AV650_25620  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AV650_25615  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AV650_17540  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfg00010  Glycolysis / Gluconeogenesis
sfg00053  Ascorbate and aldarate metabolism
sfg00061  Fatty acid biosynthesis
sfg00071  Fatty acid degradation
sfg00190  Oxidative phosphorylation
sfg00220  Arginine biosynthesis
sfg00250  Alanine, aspartate and glutamate metabolism
sfg00280  Valine, leucine and isoleucine degradation
sfg00350  Tyrosine metabolism
sfg00470  D-Amino acid metabolism
sfg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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