KEGG   PATHWAY: sfh00020
Entry
sfh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinorhizobium fredii HH103
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfh00020  Citrate cycle (TCA cycle)
sfh00020

Module
sfh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfh00020]
sfh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfh00020]
sfh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfh00020]
sfh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfh00020]
sfh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfh00020]
Other DBs
GO: 0006099
Organism
Sinorhizobium fredii HH103 [GN:sfh]
Gene
SFHH103_01231  gltA; gltA [KO:K01647] [EC:2.3.3.1]
SFHH103_05136  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SFHH103_03259  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SFHH103_06371  acnA; aconitate hydratase I [KO:K01681] [EC:4.2.1.3]
SFHH103_01529  putative isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SFHH103_06687  putative isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
SFHH103_03159  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SFHH103_06014  sucB; Putative dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SFHH103_03158  sucB; Dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SFHH103_01173  lpda1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_03001  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_03154  lpda3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_03160  sucd3; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SFHH103_03161  succ3; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SFHH103_03167  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SFHH103_03166  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SFHH103_03169  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SFHH103_03168  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
SFHH103_01586  fumC; fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
SFHH103_03162  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SFHH103_03305  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SFHH103_03543  pckA; ATP dependant phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SFHH103_01168  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SFHH103_01169  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
SFHH103_01170  dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfh00010  Glycolysis / Gluconeogenesis
sfh00053  Ascorbate and aldarate metabolism
sfh00061  Fatty acid biosynthesis
sfh00071  Fatty acid degradation
sfh00190  Oxidative phosphorylation
sfh00220  Arginine biosynthesis
sfh00250  Alanine, aspartate and glutamate metabolism
sfh00280  Valine, leucine and isoleucine degradation
sfh00350  Tyrosine metabolism
sfh00470  D-Amino acid metabolism
sfh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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