KEGG   PATHWAY: sfh00630
Entry
sfh00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sinorhizobium fredii HH103
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfh00630  Glyoxylate and dicarboxylate metabolism
sfh00630

Module
sfh_M00012  Glyoxylate cycle [PATH:sfh00630]
sfh_M00621  Glycine cleavage system [PATH:sfh00630]
sfh_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sfh00630]
Other DBs
GO: 0046487 0043648
Organism
Sinorhizobium fredii HH103 [GN:sfh]
Gene
SFHH103_01334  probable isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SFHH103_02603  acsa3; putative AMP-binding protein; AcsA-like [KO:K01895] [EC:6.2.1.1]
SFHH103_03481  acsa5; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
SFHH103_03559  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
SFHH103_03162  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SFHH103_01231  gltA; gltA [KO:K01647] [EC:2.3.3.1]
SFHH103_05136  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SFHH103_03259  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SFHH103_06371  acnA; aconitate hydratase I [KO:K01681] [EC:4.2.1.3]
SFHH103_02476  sucd1; sucd1 [KO:K08692] [EC:6.2.1.9]
SFHH103_02475  succ1; succinyl-CoA synthase, beta subunit [KO:K14067] [EC:6.2.1.9]
SFHH103_00189  fadA; fadA [KO:K00626] [EC:2.3.1.9]
SFHH103_00563  unnamed protein product [KO:K00626] [EC:2.3.1.9]
SFHH103_03002  putative acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
SFHH103_03290  phbA; phbA [KO:K00626] [EC:2.3.1.9]
SFHH103_03289  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
SFHH103_01002  hypothetical protein [KO:K05606] [EC:5.1.99.1]
SFHH103_02474  cite1; probable beta subunit of citrate lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
SFHH103_05138  pccA; putative propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
SFHH103_05140  pccB; putative propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
SFHH103_05137  bhbA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
SFHH103_00460  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
SFHH103_00461  glcE; glycolate oxidase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
SFHH103_00463  glcF; glycolate oxidase, iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
SFHH103_06054  catC; catC catalase C [KO:K03781] [EC:1.11.1.6]
SFHH103_03675  2-hydroxyacid dehydrogenase [KO:K00015] [EC:1.1.1.26]
SFHH103_06180  putative D-isomer specific 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SFHH103_03651  putative 2-hydroxyacid dehydrogenase protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SFHH103_01584  cbbZ; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SFHH103_00493  putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SFHH103_05883  cbbL; Putative ribulose-bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
SFHH103_05884  cbbS; Putative ribulose-bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
SFHH103_02473  sgaA; serine-glyoxylate aminotransferase-related [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
SFHH103_00364  glnA1; glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
SFHH103_01369  glnA3; glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
SFHH103_02042  glnA2; glnA2 [KO:K01915] [EC:6.3.1.2]
SFHH103_05162  glnII; glutamine synthetase II [KO:K01915] [EC:6.3.1.2]
SFHH103_00889  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SFHH103_01441  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
SFHH103_01443  gcvt3; glycine cleavage system protein T2 [KO:K00605] [EC:2.1.2.10]
SFHH103_01173  lpda1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_03001  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_03154  lpda3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFHH103_01442  gcvH; Glycine cleavage system H protein [KO:K02437]
SFHH103_05189  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
SFHH103_05190  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
SFHH103_05003  putative dehydrogenase [KO:K00042] [EC:1.1.1.60]
SFHH103_05191  glxR; tartronic semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
SFHH103_05192  putative glycerate kinase [KO:K11529] [EC:2.7.1.165]
SFHH103_03446  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
SFHH103_05615  putative aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
SFHH103_06187  putative 3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SFHH103_02944  putative 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SFHH103_01177  fdh; formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
SFHH103_03115  fdsD; NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
SFHH103_03117  fdsA; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
SFHH103_03118  fdsB; NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
SFHH103_03119  fdsG; formate dehydrogenase subunit gamma [KO:K00127]
SFHH103_05519  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SFHH103_03003  purU3; putative formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SFHH103_06332  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SFHH103_05726  hutG; Putative N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sfh00010  Glycolysis / Gluconeogenesis
sfh00020  Citrate cycle (TCA cycle)
sfh00030  Pentose phosphate pathway
sfh00053  Ascorbate and aldarate metabolism
sfh00071  Fatty acid degradation
sfh00230  Purine metabolism
sfh00250  Alanine, aspartate and glutamate metabolism
sfh00260  Glycine, serine and threonine metabolism
sfh00620  Pyruvate metabolism
sfh00710  Carbon fixation by Calvin cycle
sfh00750  Vitamin B6 metabolism
sfh00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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