KEGG   PATHWAY: sfic00020
Entry
sfic00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces ficellus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfic00020  Citrate cycle (TCA cycle)
sfic00020

Module
sfic_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfic00020]
sfic_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfic00020]
sfic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfic00020]
sfic_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfic00020]
sfic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfic00020]
Other DBs
GO: 0006099
Organism
Streptomyces ficellus [GN:sfic]
Gene
EIZ62_18520  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
EIZ62_21715  citrate synthase [KO:K01647] [EC:2.3.3.1]
EIZ62_06760  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EIZ62_12445  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EIZ62_03745  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EIZ62_10405  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EIZ62_24185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EIZ62_16600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EIZ62_13335  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EIZ62_13340  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EIZ62_12490  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EIZ62_12495  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EIZ62_11260  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EIZ62_12255  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EIZ62_03345  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EIZ62_11265  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EIZ62_12260  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EIZ62_03340  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EIZ62_12245  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EIZ62_03350  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EIZ62_12250  succinate dehydrogenase [KO:K00242]
EIZ62_11420  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EIZ62_11430  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EIZ62_12435  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EIZ62_11740  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EIZ62_23150  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EIZ62_24170  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EIZ62_24180  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfic00010  Glycolysis / Gluconeogenesis
sfic00053  Ascorbate and aldarate metabolism
sfic00061  Fatty acid biosynthesis
sfic00071  Fatty acid degradation
sfic00190  Oxidative phosphorylation
sfic00220  Arginine biosynthesis
sfic00250  Alanine, aspartate and glutamate metabolism
sfic00280  Valine, leucine and isoleucine degradation
sfic00350  Tyrosine metabolism
sfic00470  D-Amino acid metabolism
sfic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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