KEGG   PATHWAY: sfj00020
Entry
sfj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia ficaria
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfj00020  Citrate cycle (TCA cycle)
sfj00020

Module
sfj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfj00020]
sfj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfj00020]
sfj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfj00020]
sfj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfj00020]
sfj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfj00020]
Other DBs
GO: 0006099
Organism
Serratia ficaria [GN:sfj]
Gene
SAMEA4384070_1312  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
SAMEA4384070_2698  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SAMEA4384070_4124  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SAMEA4384070_2103  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SAMEA4384070_1317  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAMEA4384070_1318  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAMEA4384070_4711  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMEA4384070_4125  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMEA4384070_1320  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SAMEA4384070_1319  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SAMEA4384070_1315  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAMEA4384070_1316  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SAMEA4384070_1313  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
SAMEA4384070_1314  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SAMEA4384070_0436  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SAMEA4384070_0435  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
SAMEA4384070_0434  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
SAMEA4384070_0433  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
SAMEA4384070_4139  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SAMEA4384070_2340  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SAMEA4384070_0488  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SAMEA4384070_1566  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SAMEA4384070_4576  pckA_2; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SAMEA4384070_2158  pckA_1; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SAMEA4384070_4127  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SAMEA4384070_4126  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SAMEA4384070_2644  porA; Pyruvate synthase subunit porA [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfj00010  Glycolysis / Gluconeogenesis
sfj00053  Ascorbate and aldarate metabolism
sfj00061  Fatty acid biosynthesis
sfj00071  Fatty acid degradation
sfj00190  Oxidative phosphorylation
sfj00220  Arginine biosynthesis
sfj00250  Alanine, aspartate and glutamate metabolism
sfj00280  Valine, leucine and isoleucine degradation
sfj00350  Tyrosine metabolism
sfj00470  D-Amino acid metabolism
sfj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system