KEGG   PATHWAY: sfo00020
Entry
sfo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chania multitudinisentens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfo00020  Citrate cycle (TCA cycle)
sfo00020

Module
sfo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfo00020]
sfo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfo00020]
sfo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfo00020]
sfo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfo00020]
sfo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfo00020]
Other DBs
GO: 0006099
Organism
Chania multitudinisentens [GN:sfo]
Gene
Z042_19910  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Z042_00225  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Z042_07230  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Z042_23640  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Z042_19935  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
Z042_19940  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Z042_07250  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Z042_19950  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Z042_19945  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Z042_19925  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Z042_19930  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Z042_19915  succinate dehydrogenase [KO:K00241]
Z042_19920  sdhD; succinate dehydrogenase [KO:K00242]
Z042_14490  fumarate reductase [KO:K00244] [EC:1.3.5.1]
Z042_14485  fumarate reductase [KO:K00245] [EC:1.3.5.1]
Z042_14480  fumarate reductase [KO:K00246]
Z042_14475  fumarate reductase [KO:K00247]
Z042_07275  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Z042_24610  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Z042_15105  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Z042_10245  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Z042_07260  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Z042_07255  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Z042_25260  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfo00010  Glycolysis / Gluconeogenesis
sfo00053  Ascorbate and aldarate metabolism
sfo00061  Fatty acid biosynthesis
sfo00071  Fatty acid degradation
sfo00190  Oxidative phosphorylation
sfo00220  Arginine biosynthesis
sfo00250  Alanine, aspartate and glutamate metabolism
sfo00280  Valine, leucine and isoleucine degradation
sfo00350  Tyrosine metabolism
sfo00470  D-Amino acid metabolism
sfo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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