KEGG   PATHWAY: sfv00630
Entry
sfv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shigella flexneri 8401 (serotype 5b)
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfv00630  Glyoxylate and dicarboxylate metabolism
sfv00630

Module
sfv_M00012  Glyoxylate cycle [PATH:sfv00630]
sfv_M00621  Glycine cleavage system [PATH:sfv00630]
Other DBs
GO: 0046487 0043648
Organism
Shigella flexneri 8401 (serotype 5b) [GN:sfv]
Gene
SFV_4086  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SFV_4142  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
SFV_3031  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
SFV_3263  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SFV_0615  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SFV_1289  acnA; aconitate hydrase 1 [KO:K01681] [EC:4.2.1.3]
SFV_0754  ybhJ; putative enzyme [KO:K01681] [EC:4.2.1.3]
SFV_0109  acnB; aconitate hydrase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SFV_2922  yqeF; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
SFV_2963  sbm; methylmalonyl-CoA mutase (MCM) [KO:K01847] [EC:5.4.99.2]
SFV_1488  katE; catalase [KO:K03781] [EC:1.11.1.6]
SFV_3534  yiaE; putative dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SFV_3390  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SFV_3631  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SFV_2599  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SFV_2951  gcvP; glycine decarboxylase [KO:K00281] [EC:1.4.4.2]
SFV_2953  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
SFV_0107  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFV_2952  gcvH; glycine cleavage system protein H [KO:K02437]
SFV_0474  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
SFV_3165  yhaE; putative dehydrogenase [KO:K00042] [EC:1.1.1.60]
SFV_3164  yhaD; conserved hypothetical protein [KO:K00865] [EC:2.7.1.165]
SFV_1791  aldA; aldehyde dehydrogenase, NAD-linked [KO:K07248] [EC:1.2.1.22 1.2.1.21]
SFV_2878  fucO; L-1,2-propanediol oxidoreductase [KO:K00048] [EC:1.1.1.77]
SFV_3101  ttdA; L-tartrate dehydratase, subunit A [KO:K03779] [EC:4.2.1.32]
SFV_3102  ttdB; L-tartrate dehydratase, subunit B [KO:K03780] [EC:4.2.1.32]
SFV_1852  eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SFV_3601  fdoG; formate dehydrogenase-O, major subunit [KO:K00123] [EC:1.17.1.9]
SFV_3602  fdoH; formate dehydrogenase-O, iron-sulfur subunit [KO:K00124]
SFV_3603  fdoI; formate dehydrogenase, cytochrome B556 (FDO) subunit [KO:K00127]
SFV_1245  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SFV_2432  putative enzyme [KO:K01577] [EC:4.1.1.8]
SFV_2433  putative enzyme [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sfv00010  Glycolysis / Gluconeogenesis
sfv00020  Citrate cycle (TCA cycle)
sfv00030  Pentose phosphate pathway
sfv00053  Ascorbate and aldarate metabolism
sfv00071  Fatty acid degradation
sfv00230  Purine metabolism
sfv00250  Alanine, aspartate and glutamate metabolism
sfv00260  Glycine, serine and threonine metabolism
sfv00620  Pyruvate metabolism
sfv00710  Carbon fixation by Calvin cycle
sfv00750  Vitamin B6 metabolism
sfv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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