KEGG   PATHWAY: sgh00020
Entry
sgh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinocyclocheilus grahami (golden-line barbel)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgh00020  Citrate cycle (TCA cycle)
sgh00020

Module
sgh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgh00020]
sgh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgh00020]
sgh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgh00020]
sgh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgh00020]
sgh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgh00020]
Other DBs
GO: 0006099
Organism
Sinocyclocheilus grahami (golden-line barbel) [GN:sgh]
Gene
107548233  [KO:K01958] [EC:6.4.1.1]
107548787  [KO:K00030] [EC:1.1.1.41]
107551447  [KO:K00031] [EC:1.1.1.42]
107551651  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
107551952  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
107554054  [KO:K01681] [EC:4.2.1.3]
107554543  [KO:K00164] [EC:1.2.4.2]
107554778  [KO:K00658] [EC:2.3.1.61]
107556257  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
107556756  [KO:K01648] [EC:2.3.3.8]
107556802  suclg1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107557774  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107557876  [KO:K00236]
107559404  [KO:K01958] [EC:6.4.1.1]
107559949  [KO:K01681] [EC:4.2.1.3]
107560258  [KO:K01596] [EC:4.1.1.32]
107560866  [KO:K00030] [EC:1.1.1.41]
107563611  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
107564839  [KO:K01596] [EC:4.1.1.32]
107566633  sdha; LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107566960  [KO:K00164] [EC:1.2.4.2]
107567706  [KO:K01648] [EC:2.3.3.8]
107573137  [KO:K00235] [EC:1.3.5.1]
107574295  [KO:K00234] [EC:1.3.5.1]
107575107  [KO:K00030] [EC:1.1.1.41]
107575708  [KO:K00382] [EC:1.8.1.4]
107575801  [KO:K01958] [EC:6.4.1.1]
107576250  [KO:K00382] [EC:1.8.1.4]
107577591  [KO:K00026] [EC:1.1.1.37]
107577772  [KO:K00025] [EC:1.1.1.37]
107577886  [KO:K00237]
107578004  [KO:K00234] [EC:1.3.5.1]
107578564  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107579547  [KO:K00030] [EC:1.1.1.41]
107581356  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107583187  [KO:K00025] [EC:1.1.1.37]
107583287  [KO:K01958] [EC:6.4.1.1]
107583563  [KO:K00025] [EC:1.1.1.37]
107584097  [KO:K01681] [EC:4.2.1.3]
107584790  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107585351  [KO:K00164] [EC:1.2.4.2]
107586238  [KO:K00237]
107586777  [KO:K00161] [EC:1.2.4.1]
107586915  [KO:K00162] [EC:1.2.4.1]
107588648  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
107588934  [KO:K00026] [EC:1.1.1.37]
107588948  [KO:K00164] [EC:1.2.4.2]
107589937  [KO:K01596] [EC:4.1.1.32]
107590593  [KO:K01648] [EC:2.3.3.8]
107591068  [KO:K00030] [EC:1.1.1.41]
107591143  [KO:K00235] [EC:1.3.5.1]
107591944  [KO:K00164] [EC:1.2.4.2]
107592287  [KO:K00161] [EC:1.2.4.1]
107593072  [KO:K00162] [EC:1.2.4.1]
107593912  [KO:K00030] [EC:1.1.1.41]
107593926  [KO:K00235] [EC:1.3.5.1]
107594000  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107594420  [KO:K00025] [EC:1.1.1.37]
107595190  [KO:K01679] [EC:4.2.1.2]
107595681  [KO:K00030] [EC:1.1.1.41]
107597754  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
107598166  [KO:K00031] [EC:1.1.1.42]
107598448  [KO:K00237]
107598842  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107598889  [KO:K00382] [EC:1.8.1.4]
107599367  [KO:K01647] [EC:2.3.3.1]
107599948  [KO:K00161] [EC:1.2.4.1]
107600074  [KO:K00236]
107601170  [KO:K01681] [EC:4.2.1.3]
107601715  [KO:K00237]
107603285  [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgh00010  Glycolysis / Gluconeogenesis
sgh00053  Ascorbate and aldarate metabolism
sgh00061  Fatty acid biosynthesis
sgh00062  Fatty acid elongation
sgh00071  Fatty acid degradation
sgh00190  Oxidative phosphorylation
sgh00220  Arginine biosynthesis
sgh00250  Alanine, aspartate and glutamate metabolism
sgh00280  Valine, leucine and isoleucine degradation
sgh00350  Tyrosine metabolism
sgh00470  D-Amino acid metabolism
sgh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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