KEGG   PATHWAY: sgh00020
Entry
sgh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sinocyclocheilus grahami (golden-line barbel)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgh00020  Citrate cycle (TCA cycle)
sgh00020

Module
sgh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgh00020]
sgh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgh00020]
sgh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgh00020]
sgh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgh00020]
sgh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgh00020]
Other DBs
GO: 0006099
Organism
Sinocyclocheilus grahami (golden-line barbel) [GN:sgh]
Gene
107599367  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
107594000  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107590593  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
107567706  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
107556756  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
107554054  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107601170  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
107559949  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
107584097  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107556257  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
107598166  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
107551447  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
107551952  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
107595681  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107598842  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107560866  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107593912  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107575107  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107591068  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107548787  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
107579547  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
107585351  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
107591944  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107566960  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107554543  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
107588648  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
107588948  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
107554778  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107563611  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
107575708  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107598889  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107576250  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107578564  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107556802  suclg1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107584790  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107581356  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107557774  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107574295  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107578004  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107566633  sdha; LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107573137  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
107593926  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107591143  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107600074  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107557876  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107577886  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
107586238  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
107598448  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like isoform X1 [KO:K00237]
107601715  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
107597754  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
107595190  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107594420  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107583563  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107577772  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107583187  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
107577591  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107588934  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
107548233  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
107559404  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107583287  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107575801  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107564839  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
107589937  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
107560258  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
107592287  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
107599948  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
107586777  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107586915  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107593072  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107551651  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
107603285  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgh00010  Glycolysis / Gluconeogenesis
sgh00053  Ascorbate and aldarate metabolism
sgh00061  Fatty acid biosynthesis
sgh00062  Fatty acid elongation
sgh00071  Fatty acid degradation
sgh00190  Oxidative phosphorylation
sgh00220  Arginine biosynthesis
sgh00250  Alanine, aspartate and glutamate metabolism
sgh00280  Valine, leucine and isoleucine degradation
sgh00350  Tyrosine metabolism
sgh00470  D-Amino acid metabolism
sgh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system