KEGG   PATHWAY: shd00020
Entry
shd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfuritalea hydrogenivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shd00020  Citrate cycle (TCA cycle)
shd00020

Module
shd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shd00020]
shd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:shd00020]
shd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shd00020]
shd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shd00020]
shd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shd00020]
Other DBs
GO: 0006099
Organism
Sulfuritalea hydrogenivorans [GN:shd]
Gene
SUTH_01805  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SUTH_01796  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SUTH_01090  icd; isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SUTH_02229  isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
SUTH_01806  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
SUTH_01807  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SUTH_00741  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SUTH_01808  2-oxoglutarate dehydrogenase complex E3 component [KO:K00382] [EC:1.8.1.4]
SUTH_02828  korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SUTH_02827  korB1; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SUTH_02802  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SUTH_02803  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SUTH_01802  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SUTH_01803  sdhB; succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SUTH_01800  succinate dehydrogenase [KO:K00241]
SUTH_01801  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SUTH_01374  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SUTH_01373  succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SUTH_01372  fumarate reductase subunit C [KO:K00246]
SUTH_01371  fumarate reductase subunit D [KO:K00247]
SUTH_02309  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
SUTH_01798  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SUTH_03000  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SUTH_00738  pdhA; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SUTH_02978  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SUTH_02979  pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
SUTH_00739  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SUTH_02980  branched-chain alpha-keto acid dehydrogenase E2 subunit [KO:K00627] [EC:2.3.1.12]
SUTH_02970  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K00169] [EC:1.2.7.1]
SUTH_02971  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
SUTH_01418  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shd00010  Glycolysis / Gluconeogenesis
shd00053  Ascorbate and aldarate metabolism
shd00061  Fatty acid biosynthesis
shd00071  Fatty acid degradation
shd00190  Oxidative phosphorylation
shd00220  Arginine biosynthesis
shd00250  Alanine, aspartate and glutamate metabolism
shd00280  Valine, leucine and isoleucine degradation
shd00350  Tyrosine metabolism
shd00470  D-Amino acid metabolism
shd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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