KEGG   PATHWAY: simp00020
Entry
simp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Simplicispira suum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
simp00020  Citrate cycle (TCA cycle)
simp00020

Module
simp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:simp00020]
simp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:simp00020]
simp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:simp00020]
simp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:simp00020]
Other DBs
GO: 0006099
Organism
Simplicispira suum [GN:simp]
Gene
C6571_12550  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C6571_03565  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C6571_12600  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C6571_15595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C6571_15610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C6571_15105  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C6571_15110  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C6571_17180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6571_03615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6571_15810  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6571_17490  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6571_15115  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C6571_17850  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
C6571_17855  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
C6571_08550  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C6571_08545  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C6571_12565  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C6571_02590  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C6571_12560  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C6571_02580  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C6571_12575  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C6571_02585  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C6571_12570  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C6571_13185  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C6571_13190  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C6571_12585  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C6571_06775  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C6571_17190  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C6571_01470  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C6571_17185  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C6571_15805  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
simp00010  Glycolysis / Gluconeogenesis
simp00061  Fatty acid biosynthesis
simp00071  Fatty acid degradation
simp00190  Oxidative phosphorylation
simp00220  Arginine biosynthesis
simp00250  Alanine, aspartate and glutamate metabolism
simp00280  Valine, leucine and isoleucine degradation
simp00350  Tyrosine metabolism
simp00470  D-Amino acid metabolism
simp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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