KEGG   PATHWAY: sinh03030
Entry
sinh03030                   Pathway                                
Name
DNA replication - Sinomicrobium kalidii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sinh03030  DNA replication
sinh03030

Organism
Sinomicrobium kalidii [GN:sinh]
Gene
LS482_02660  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LS482_03180  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LS482_15455  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LS482_21410  GIY-YIG nuclease family protein [KO:K02342] [EC:2.7.7.7]
LS482_00250  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LS482_07895  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LS482_16860  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LS482_09195  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LS482_00475  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LS482_15050  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LS482_15390  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
LS482_14325  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
LS482_01765  ssb; single-stranded DNA-binding protein [KO:K03111]
LS482_10150  ssb; single-stranded DNA-binding protein [KO:K03111]
LS482_17345  ssb; single-stranded DNA-binding protein [KO:K03111]
LS482_07035  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
LS482_11975  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
LS482_06660  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LS482_20840  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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