KEGG   PATHWAY: sinv00020
Entry
sinv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella inventionis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sinv00020  Citrate cycle (TCA cycle)
sinv00020

Module
sinv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sinv00020]
sinv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sinv00020]
sinv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sinv00020]
sinv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sinv00020]
sinv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sinv00020]
Other DBs
GO: 0006099
Organism
Shewanella inventionis [GN:sinv]
Gene
K8B83_11255  citrate synthase [KO:K01647] [EC:2.3.3.1]
K8B83_17365  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K8B83_04090  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K8B83_13945  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K8B83_17150  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
K8B83_11280  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K8B83_11285  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K8B83_04070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K8B83_11295  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K8B83_11290  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K8B83_11270  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K8B83_11275  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K8B83_11260  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
K8B83_11265  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K8B83_20965  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
K8B83_20960  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
K8B83_20970  fumarate reductase cytochrome b subunit [KO:K25996]
K8B83_04405  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
K8B83_13350  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K8B83_17370  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
K8B83_06040  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K8B83_02660  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K8B83_04060  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K8B83_04065  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sinv00010  Glycolysis / Gluconeogenesis
sinv00053  Ascorbate and aldarate metabolism
sinv00061  Fatty acid biosynthesis
sinv00071  Fatty acid degradation
sinv00190  Oxidative phosphorylation
sinv00220  Arginine biosynthesis
sinv00250  Alanine, aspartate and glutamate metabolism
sinv00280  Valine, leucine and isoleucine degradation
sinv00350  Tyrosine metabolism
sinv00470  D-Amino acid metabolism
sinv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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