KEGG   PATHWAY: ske00020
Entry
ske00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sanguibacter keddieii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ske00020  Citrate cycle (TCA cycle)
ske00020

Module
ske_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ske00020]
ske_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ske00020]
ske_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ske00020]
ske_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ske00020]
Other DBs
GO: 0006099
Organism
Sanguibacter keddieii [GN:ske]
Gene
Sked_25990  citrate synthase [KO:K01647] [EC:2.3.3.1]
Sked_16250  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Sked_37720  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Sked_09540  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Sked_15470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sked_28150  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Sked_28160  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Sked_25820  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Sked_06460  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sked_25830  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Sked_25800  succinate dehydrogenase subunit C [KO:K00241]
Sked_25810  succinate dehydrogenase subunit D [KO:K00242]
Sked_26470  fumarase [KO:K01679] [EC:4.2.1.2]
Sked_28070  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Sked_13020  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Sked_18300  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Sked_06760  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Sked_14140  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Sked_18830  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Sked_18840  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Sked_18850  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Sked_15460  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ske00010  Glycolysis / Gluconeogenesis
ske00053  Ascorbate and aldarate metabolism
ske00061  Fatty acid biosynthesis
ske00071  Fatty acid degradation
ske00190  Oxidative phosphorylation
ske00220  Arginine biosynthesis
ske00250  Alanine, aspartate and glutamate metabolism
ske00280  Valine, leucine and isoleucine degradation
ske00350  Tyrosine metabolism
ske00470  D-Amino acid metabolism
ske00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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