KEGG   PATHWAY: sks00020
Entry
sks00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salinivibrio kushneri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sks00020  Citrate cycle (TCA cycle)
sks00020

Module
sks_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sks00020]
sks_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sks00020]
sks_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sks00020]
sks_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sks00020]
sks_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sks00020]
Other DBs
GO: 0006099
Organism
Salinivibrio kushneri [GN:sks]
Gene
FCN78_04695  citrate synthase [KO:K01647] [EC:2.3.3.1]
FCN78_15130  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FCN78_02250  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FCN78_09015  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FCN78_04720  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FCN78_04725  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FCN78_01205  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCN78_02235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCN78_04735  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FCN78_04730  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FCN78_04710  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCN78_04715  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCN78_04700  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FCN78_04705  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FCN78_11875  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
FCN78_11880  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
FCN78_11885  frdC; fumarate reductase subunit FrdC [KO:K00246]
FCN78_11890  frdD; fumarate reductase subunit FrdD [KO:K00247]
FCN78_07355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FCN78_15160  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FCN78_11475  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCN78_12495  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FCN78_02225  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FCN78_02230  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sks00010  Glycolysis / Gluconeogenesis
sks00053  Ascorbate and aldarate metabolism
sks00061  Fatty acid biosynthesis
sks00071  Fatty acid degradation
sks00190  Oxidative phosphorylation
sks00220  Arginine biosynthesis
sks00250  Alanine, aspartate and glutamate metabolism
sks00280  Valine, leucine and isoleucine degradation
sks00350  Tyrosine metabolism
sks00470  D-Amino acid metabolism
sks00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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