KEGG   PATHWAY: slal00630
Entry
slal00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Seriola lalandi dorsalis (Yellowtail amberjack)
Class
Metabolism; Carbohydrate metabolism
Pathway map
slal00630  Glyoxylate and dicarboxylate metabolism
slal00630

Module
slal_M00621  Glycine cleavage system [PATH:slal00630]
slal_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:slal00630]
Other DBs
GO: 0046487 0043648
Organism
Seriola lalandi dorsalis (Yellowtail amberjack) [GN:slal]
Gene
111658408  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
111644203  acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1 [KO:K01895] [EC:6.2.1.1]
111646218  acss1; acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
111652669  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
111662020  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111658337  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111658021  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111661863  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111646118  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111667953  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111647573  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111650543  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
111663518  acat1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
111668363  mcee; methylmalonyl-CoA epimerase, mitochondrial [KO:K05606] [EC:5.1.99.1]
111672978  pcca; propionyl-CoA carboxylase alpha chain, mitochondrial [KO:K01965] [EC:6.4.1.3]
111665815  pccb; propionyl-CoA carboxylase beta chain, mitochondrial [KO:K01966] [EC:6.4.1.3 2.1.3.15]
111672596  mut; methylmalonyl-CoA mutase, mitochondrial [KO:K01847] [EC:5.4.99.2]
111647706  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
111652113  hao2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
111650415  cat; catalase [KO:K03781] [EC:1.11.1.6]
111646650  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
111664547  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
111671980  pgp; glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
111654403  serine--pyruvate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111669610  serine--pyruvate aminotransferase, mitochondrial-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111662623  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
111650123  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
111653534  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
111670587  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
111647591  shmt1; serine hydroxymethyltransferase, cytosolic [KO:K00600] [EC:2.1.2.1]
111659805  shmt2; serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
111651677  gldc; glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
111665100  amt; aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
111650494  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111653315  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
111658346  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
111644409  hyi; putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
111653827  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
111665639  hoga1; 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [KO:K18123] [EC:4.1.3.16]
111666746  afmid; kynurenine formamidase [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
slal00010  Glycolysis / Gluconeogenesis
slal00020  Citrate cycle (TCA cycle)
slal00030  Pentose phosphate pathway
slal00053  Ascorbate and aldarate metabolism
slal00071  Fatty acid degradation
slal00230  Purine metabolism
slal00250  Alanine, aspartate and glutamate metabolism
slal00260  Glycine, serine and threonine metabolism
slal00620  Pyruvate metabolism
slal00750  Vitamin B6 metabolism
slal00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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