KEGG   PATHWAY: slal00030
Entry
slal00030                   Pathway                                
Name
Pentose phosphate pathway - Seriola lalandi dorsalis (Yellowtail amberjack)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slal00030  Pentose phosphate pathway
slal00030

Module
slal_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:slal00030]
slal_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:slal00030]
slal_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:slal00030]
slal_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:slal00030]
Other DBs
GO: 0006098
Organism
Seriola lalandi dorsalis (Yellowtail amberjack) [GN:slal]
Gene
111672282  gpi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
111670742  glucose-6-phosphate 1-dehydrogenase-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
111671539  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
111653705  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
111648426  GDH/6PGL endoplasmic bifunctional protein-like [KO:K13937] [EC:1.1.1.47 3.1.1.31]
111651100  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
111670644  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
111662080  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
111670578  transketolase-like isoform X1 [KO:K00615] [EC:2.2.1.1]
111668977  transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
111660854  transketolase-like [KO:K00615] [EC:2.2.1.1]
111659429  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
111646822  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
111663838  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
111657560  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
111656294  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
111645342  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
111670518  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
111664103  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
111665346  prps2; ribose-phosphate pyrophosphokinase 2 isoform X1 [KO:K00948] [EC:2.7.6.1]
111652070  prps1; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
111669701  rgn; regucalcin isoform X1 [KO:K01053] [EC:3.1.1.17]
111660884  idnk; probable gluconokinase [KO:K00851] [EC:2.7.1.12]
111653827  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
111646655  fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
111647261  fructose-bisphosphate aldolase 5, cytosolic-like [KO:K01623] [EC:4.1.2.13]
111666232  aldoc; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
111667230  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
111653854  fructose-bisphosphate aldolase C-like [KO:K01623] [EC:4.1.2.13]
111658734  fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
111666767  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
111660879  LOW QUALITY PROTEIN: fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
111660949  fructose-1,6-bisphosphatase isozyme 2-like [KO:K03841] [EC:3.1.3.11]
111652242  ATP-dependent 6-phosphofructokinase, liver type-like [KO:K00850] [EC:2.7.1.11]
111670697  pfkm; ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
111659843  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
111671498  ATP-dependent 6-phosphofructokinase, liver type-like [KO:K00850] [EC:2.7.1.11]
111652222  ATP-dependent 6-phosphofructokinase, liver type-like [KO:K00850] [EC:2.7.1.11]
111669756  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
111667737  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
slal00010  Glycolysis / Gluconeogenesis
slal00040  Pentose and glucuronate interconversions
slal00052  Galactose metabolism
slal00230  Purine metabolism
slal00240  Pyrimidine metabolism
slal00340  Histidine metabolism
slal00630  Glyoxylate and dicarboxylate metabolism
slal00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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