KEGG   PATHWAY: slim00020
Entry
slim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfuricaulis limicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
slim00020  Citrate cycle (TCA cycle)
slim00020

Module
slim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:slim00020]
slim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:slim00020]
Other DBs
GO: 0006099
Organism
Sulfuricaulis limicola [GN:slim]
Gene
SCL_2023  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SCL_2316  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SCL_1971  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SCL_0041  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
SCL_0042  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SCL_0804  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCL_0043  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCL_1954  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SCL_1955  malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SCL_1538  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCL_1534  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCL_1540  succinate dehydrogenase [KO:K00241]
SCL_1539  succinate dehydrogenase [KO:K00242]
SCL_2752  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SCL_1364  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
SCL_1363  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
SCL_0802  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SCL_0803  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SCL_2606  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
slim00010  Glycolysis / Gluconeogenesis
slim00053  Ascorbate and aldarate metabolism
slim00061  Fatty acid biosynthesis
slim00071  Fatty acid degradation
slim00190  Oxidative phosphorylation
slim00220  Arginine biosynthesis
slim00250  Alanine, aspartate and glutamate metabolism
slim00280  Valine, leucine and isoleucine degradation
slim00350  Tyrosine metabolism
slim00470  D-Amino acid metabolism
slim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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