KEGG   PATHWAY: slj03430
Entry
slj03430                    Pathway                                
Name
Mismatch repair - Shewanella livingstonensis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
slj03430  Mismatch repair
slj03430

Other DBs
GO: 0006298
Organism
Shewanella livingstonensis [GN:slj]
Gene
EGC82_06980  mutS; DNA mismatch repair protein MutS [KO:K03555]
EGC82_18880  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
EGC82_16910  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
EGC82_17990  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
EGC82_19295  DNA helicase II [KO:K03657] [EC:5.6.2.4]
EGC82_13305  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
EGC82_07405  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
EGC82_15810  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
EGC82_18270  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
EGC82_20625  single-stranded DNA-binding protein [KO:K03111]
EGC82_14905  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
EGC82_01125  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
EGC82_09050  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
EGC82_17850  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
EGC82_09940  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
EGC82_09120  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EGC82_12490  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EGC82_01090  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EGC82_10115  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
EGC82_06275  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
EGC82_08775  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
EGC82_03350  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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