KEGG   PATHWAY: smaa00020
Entry
smaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salinimonas marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smaa00020  Citrate cycle (TCA cycle)
smaa00020

Module
smaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smaa00020]
smaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smaa00020]
smaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smaa00020]
smaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smaa00020]
Other DBs
GO: 0006099
Organism
Salinimonas marina [GN:smaa]
Gene
IT774_08670  citrate synthase [KO:K01647] [EC:2.3.3.1]
IT774_13920  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IT774_06895  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IT774_12885  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
IT774_08645  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IT774_08640  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IT774_03670  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IT774_08630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IT774_08635  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IT774_08655  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IT774_08650  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IT774_08665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IT774_08660  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IT774_06300  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IT774_02150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IT774_03660  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IT774_03665  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smaa00010  Glycolysis / Gluconeogenesis
smaa00053  Ascorbate and aldarate metabolism
smaa00061  Fatty acid biosynthesis
smaa00071  Fatty acid degradation
smaa00190  Oxidative phosphorylation
smaa00220  Arginine biosynthesis
smaa00250  Alanine, aspartate and glutamate metabolism
smaa00280  Valine, leucine and isoleucine degradation
smaa00350  Tyrosine metabolism
smaa00470  D-Amino acid metabolism
smaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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