KEGG   PATHWAY: snap03440
Entry
snap03440                   Pathway                                
Name
Homologous recombination - Sphingomonas naphthae
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
snap03440  Homologous recombination
snap03440

Other DBs
GO: 0000724
Organism
Sphingomonas naphthae [GN:snap]
Gene
PQ455_00790  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
PQ455_20085  single-stranded DNA-binding protein [KO:K03111]
PQ455_20565  single-stranded DNA-binding protein [KO:K03111]
PQ455_00470  ssb; single-stranded DNA-binding protein [KO:K03111]
PQ455_16775  recF; DNA replication/repair protein RecF [KO:K03629]
PQ455_05015  recO; DNA repair protein RecO [KO:K03584]
PQ455_04930  recR; recombination mediator RecR [KO:K06187]
PQ455_06630  recA; recombinase RecA [KO:K03553]
PQ455_17070  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
PQ455_12655  ruvA; Holliday junction branch migration protein RuvA [KO:K03550]
PQ455_12640  ruvB; Holliday junction branch migration DNA helicase RuvB [KO:K03551] [EC:5.6.2.4]
PQ455_13060  ruvC; crossover junction endodeoxyribonuclease RuvC [KO:K01159] [EC:3.1.21.10]
PQ455_01830  recG; ATP-dependent DNA helicase RecG [KO:K03655] [EC:5.6.2.4]
PQ455_06660  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
PQ455_16770  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
PQ455_06820  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
PQ455_16320  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
PQ455_07235  AAA family ATPase [KO:K02341] [EC:2.7.7.7]
PQ455_13550  exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
PQ455_16950  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
PQ455_19390  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
PQ455_19970  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
PQ455_08355  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
PQ455_08035  primosomal protein N' [KO:K04066] [EC:5.6.2.4]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
LinkDB

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