KEGG   PATHWAY: soq00260
Entry
soq00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Spirosoma oryzicola
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
soq00260  Glycine, serine and threonine metabolism
soq00260

Module
soq_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:soq00260]
soq_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:soq00260]
soq_M00621  Glycine cleavage system [PATH:soq00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Spirosoma oryzicola [GN:soq]
Gene
LQ777_00580  aspartate kinase [KO:K00928] [EC:2.7.2.4]
LQ777_22845  aspartate kinase [KO:K00928] [EC:2.7.2.4]
LQ777_03600  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
LQ777_01060  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
LQ777_03225  homoserine kinase [KO:K00872] [EC:2.7.1.39]
LQ777_00085  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
LQ777_09580  threonine synthase [KO:K01733] [EC:4.2.3.1]
LQ777_09545  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K01620] [EC:4.1.2.48]
LQ777_26455  aminotransferase class V-fold PLP-dependent enzyme [KO:K01620] [EC:4.1.2.48]
LQ777_02005  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LQ777_05645  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
LQ777_05640  glycerate kinase [KO:K00865] [EC:2.7.1.165]
LQ777_16450  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
LQ777_17310  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
LQ777_07195  2-hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
LQ777_17125  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
LQ777_08505  aminotransferase class V-fold PLP-dependent enzyme [KO:K00831] [EC:2.6.1.52]
LQ777_17130  aminotransferase class V-fold PLP-dependent enzyme [KO:K00831] [EC:2.6.1.52]
LQ777_07015  pyridoxal phosphate-dependent aminotransferase family protein [KO:K00639] [EC:2.3.1.29]
LQ777_08445  kbl; glycine C-acetyltransferase [KO:K00639] [EC:2.3.1.29]
LQ777_21410  flavin monoamine oxidase family protein [KO:K00274] [EC:1.4.3.4]
LQ777_22460  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LQ777_02995  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LQ777_17265  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LQ777_22870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LQ777_03560  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LQ777_19420  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
LQ777_02720  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
LQ777_00555  cystathionine gamma-synthase [KO:K01758] [EC:4.4.1.1]
LQ777_06025  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
LQ777_00695  ilvA; threonine ammonia-lyase IlvA [KO:K01754] [EC:4.3.1.19]
LQ777_23995  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
LQ777_23990  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
soq00010  Glycolysis / Gluconeogenesis
soq00020  Citrate cycle (TCA cycle)
soq00230  Purine metabolism
soq00250  Alanine, aspartate and glutamate metabolism
soq00270  Cysteine and methionine metabolism
soq00290  Valine, leucine and isoleucine biosynthesis
soq00300  Lysine biosynthesis
soq00330  Arginine and proline metabolism
soq00460  Cyanoamino acid metabolism
soq00470  D-Amino acid metabolism
soq00564  Glycerophospholipid metabolism
soq00600  Sphingolipid metabolism
soq00620  Pyruvate metabolism
soq00630  Glyoxylate and dicarboxylate metabolism
soq00640  Propanoate metabolism
soq00680  Methane metabolism
soq00860  Porphyrin metabolism
soq00920  Sulfur metabolism
KO pathway
ko00260   
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