KEGG   PATHWAY: spav00020
Entry
spav00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces parvulus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spav00020  Citrate cycle (TCA cycle)
spav00020

Module
spav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spav00020]
spav_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spav00020]
spav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spav00020]
spav_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spav00020]
spav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spav00020]
Other DBs
GO: 0006099
Organism
Streptomyces parvulus [GN:spav]
Gene
Spa2297_11565  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Spa2297_24710  citrate synthase [KO:K01647] [EC:2.3.3.1]
Spa2297_24715  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
Spa2297_14470  citrate synthase [KO:K01647] [EC:2.3.3.1]
Spa2297_25225  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Spa2297_28605  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Spa2297_22305  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Spa2297_09010  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Spa2297_19425  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Spa2297_19420  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Spa2297_20300  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Spa2297_27435  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Spa2297_20295  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Spa2297_27430  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Spa2297_21535  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Spa2297_29015  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Spa2297_20520  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Spa2297_21530  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Spa2297_29020  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Spa2297_20515  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Spa2297_29010  succinate dehydrogenase [KO:K00241]
Spa2297_20530  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Spa2297_20525  succinate dehydrogenase [KO:K00242]
Spa2297_21355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Spa2297_21350  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
Spa2297_20360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Spa2297_30845  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Spa2297_21070  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Spa2297_09025  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Spa2297_09975  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Spa2297_09015  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spav00010  Glycolysis / Gluconeogenesis
spav00053  Ascorbate and aldarate metabolism
spav00061  Fatty acid biosynthesis
spav00071  Fatty acid degradation
spav00190  Oxidative phosphorylation
spav00220  Arginine biosynthesis
spav00250  Alanine, aspartate and glutamate metabolism
spav00280  Valine, leucine and isoleucine degradation
spav00350  Tyrosine metabolism
spav00470  D-Amino acid metabolism
spav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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