KEGG   PATHWAY: spen00020
Entry
spen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Solanum pennellii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spen00020  Citrate cycle (TCA cycle)
spen00020

Module
spen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spen00020]
spen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spen00020]
spen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spen00020]
spen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spen00020]
spen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spen00020]
Other DBs
GO: 0006099
Organism
Solanum pennellii [GN:spen]
Gene
107024591  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
107007656  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
107008212  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
107007372  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
107020794  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107007996  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107018342  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
107008135  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
107025786  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107007130  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107011997  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107004420  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107007760  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107008638  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107002522  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107028739  3-isopropylmalate dehydrogenase, chloroplastic isoform X1 [KO:K00030] [EC:1.1.1.41]
107017794  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107020287  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
107026421  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107007148  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107020311  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
107007335  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107002080  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
107020411  dihydrolipoyl dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
107008301  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107011837  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107023519  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107011073  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
107017398  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107017406  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107011638  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
34926000  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
34925978  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
107031642  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
107031106  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107015478  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
107001458  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107031532  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107012039  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
107014182  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
107025677  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107005541  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107017757  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
107006562  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
107018256  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
107006719  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
107018164  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107020505  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107007273  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107007280  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
107023500  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
107028544  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
107018007  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like isoform X1 [KO:K00162] [EC:1.2.4.1]
107018805  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107014376  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107004652  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107020534  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107026245  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
107004750  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spen00010  Glycolysis / Gluconeogenesis
spen00053  Ascorbate and aldarate metabolism
spen00061  Fatty acid biosynthesis
spen00062  Fatty acid elongation
spen00071  Fatty acid degradation
spen00190  Oxidative phosphorylation
spen00220  Arginine biosynthesis
spen00250  Alanine, aspartate and glutamate metabolism
spen00280  Valine, leucine and isoleucine degradation
spen00350  Tyrosine metabolism
spen00470  D-Amino acid metabolism
spen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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