KEGG   PATHWAY: sphf00020
Entry
sphf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas sp. FARSPH
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sphf00020  Citrate cycle (TCA cycle)
sphf00020

Module
sphf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sphf00020]
sphf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sphf00020]
sphf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sphf00020]
sphf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sphf00020]
sphf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sphf00020]
Other DBs
GO: 0006099
Organism
Sphingomonas sp. FARSPH [GN:sphf]
Gene
DM480_15630  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DM480_09995  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DM480_13730  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DM480_11225  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DM480_11230  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DM480_11240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM480_02875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM480_11220  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DM480_06195  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DM480_16100  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
DM480_11175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DM480_11190  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DM480_11165  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DM480_11170  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DM480_10420  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DM480_10300  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DM480_11210  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DM480_14805  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DM480_13985  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DM480_13990  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DM480_02895  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sphf00010  Glycolysis / Gluconeogenesis
sphf00053  Ascorbate and aldarate metabolism
sphf00061  Fatty acid biosynthesis
sphf00071  Fatty acid degradation
sphf00190  Oxidative phosphorylation
sphf00220  Arginine biosynthesis
sphf00250  Alanine, aspartate and glutamate metabolism
sphf00280  Valine, leucine and isoleucine degradation
sphf00350  Tyrosine metabolism
sphf00470  D-Amino acid metabolism
sphf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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