KEGG   PATHWAY: splm00020
Entry
splm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas sp. LM7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
splm00020  Citrate cycle (TCA cycle)
splm00020

Module
splm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:splm00020]
splm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:splm00020]
splm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:splm00020]
splm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:splm00020]
Other DBs
GO: 0006099
Organism
Sphingomonas sp. LM7 [GN:splm]
Gene
BXU08_02880  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BXU08_11920  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BXU08_05670  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BXU08_17365  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BXU08_17360  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BXU08_17355  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXU08_09220  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXU08_04990  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BXU08_04985  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BXU08_17370  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BXU08_14195  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BXU08_11315  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BXU08_17400  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BXU08_11305  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BXU08_11310  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BXU08_10990  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BXU08_17380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BXU08_05475  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BXU08_05470  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BXU08_09200  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
splm00010  Glycolysis / Gluconeogenesis
splm00053  Ascorbate and aldarate metabolism
splm00061  Fatty acid biosynthesis
splm00071  Fatty acid degradation
splm00190  Oxidative phosphorylation
splm00220  Arginine biosynthesis
splm00250  Alanine, aspartate and glutamate metabolism
splm00280  Valine, leucine and isoleucine degradation
splm00350  Tyrosine metabolism
splm00470  D-Amino acid metabolism
splm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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