KEGG   PATHWAY: sply00020
Entry
sply00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia inhibens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sply00020  Citrate cycle (TCA cycle)
sply00020

Module
sply_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sply00020]
sply_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sply00020]
sply_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sply00020]
sply_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sply00020]
sply_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sply00020]
Other DBs
GO: 0006099
Organism
Serratia inhibens [GN:sply]
Gene
Q5A_006340  gltA_1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
Q5A_013875  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Q5A_021210  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q5A_010160  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Q5A_006365  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q5A_006370  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Q5A_016700  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_024805  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_021220  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_006380  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Q5A_006375  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Q5A_006355  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q5A_006360  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q5A_006345  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
Q5A_006350  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
Q5A_001635  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Q5A_001630  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
Q5A_001625  frdC; Fumarate reductase subunit C [KO:K00246]
Q5A_001620  frdD; Fumarate reductase subunit D [KO:K00247]
Q5A_021270  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
Q5A_011680  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Q5A_001900  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q5A_007615  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Q5A_010595  pckA_1; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Q5A_024035  pckA_2; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Q5A_021230  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Q5A_016705  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Q5A_021225  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Q5A_013635  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sply00010  Glycolysis / Gluconeogenesis
sply00053  Ascorbate and aldarate metabolism
sply00061  Fatty acid biosynthesis
sply00071  Fatty acid degradation
sply00190  Oxidative phosphorylation
sply00220  Arginine biosynthesis
sply00250  Alanine, aspartate and glutamate metabolism
sply00280  Valine, leucine and isoleucine degradation
sply00350  Tyrosine metabolism
sply00470  D-Amino acid metabolism
sply00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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