KEGG   PATHWAY: spq00020
Entry
spq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Paratyphi B
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spq00020  Citrate cycle (TCA cycle)
spq00020

Module
spq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spq00020]
spq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spq00020]
spq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spq00020]
spq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spq00020]
spq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spq00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Paratyphi B [GN:spq]
Gene
SPAB_02803  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SPAB_01539  hypothetical protein [KO:K01681] [EC:4.2.1.3]
SPAB_00197  hypothetical protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SPAB_02276  hypothetical protein [KO:K00031] [EC:1.1.1.42]
SPAB_02798  hypothetical protein [KO:K00164] [EC:1.2.4.2]
SPAB_02797  hypothetical protein [KO:K00658] [EC:2.3.1.61]
SPAB_00192  hypothetical protein [KO:K00382] [EC:1.8.1.4]
SPAB_02794  hypothetical protein [KO:K01902] [EC:6.2.1.5]
SPAB_02796  hypothetical protein [KO:K01903] [EC:6.2.1.5]
SPAB_02800  hypothetical protein [KO:K00239] [EC:1.3.5.1]
SPAB_02799  hypothetical protein [KO:K00240] [EC:1.3.5.1]
SPAB_02802  hypothetical protein [KO:K00241]
SPAB_02801  hypothetical protein [KO:K00242]
SPAB_05474  hypothetical protein [KO:K00244] [EC:1.3.5.1]
SPAB_05473  hypothetical protein [KO:K00245] [EC:1.3.5.1]
SPAB_05472  hypothetical protein [KO:K00246]
SPAB_05471  hypothetical protein [KO:K00247]
SPAB_01851  hypothetical protein [KO:K01676] [EC:4.2.1.2]
SPAB_05302  hypothetical protein [KO:K01676] [EC:4.2.1.2]
SPAB_02761  hypothetical protein [KO:K01677] [EC:4.2.1.2]
SPAB_02762  hypothetical protein [KO:K01678] [EC:4.2.1.2]
SPAB_01850  hypothetical protein [KO:K01679] [EC:4.2.1.2]
SPAB_01940  hypothetical protein [KO:K01675] [EC:4.2.1.2]
SPAB_04185  hypothetical protein [KO:K00024] [EC:1.1.1.37]
SPAB_04356  hypothetical protein [KO:K01610] [EC:4.1.1.49]
SPAB_00189  hypothetical protein [KO:K00163] [EC:1.2.4.1]
SPAB_00190  hypothetical protein [KO:K00627] [EC:2.3.1.12]
SPAB_01620  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spq00010  Glycolysis / Gluconeogenesis
spq00053  Ascorbate and aldarate metabolism
spq00061  Fatty acid biosynthesis
spq00071  Fatty acid degradation
spq00190  Oxidative phosphorylation
spq00220  Arginine biosynthesis
spq00250  Alanine, aspartate and glutamate metabolism
spq00280  Valine, leucine and isoleucine degradation
spq00350  Tyrosine metabolism
spq00470  D-Amino acid metabolism
spq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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