KEGG   PATHWAY: squ00020
Entry
squ00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia quinivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
squ00020  Citrate cycle (TCA cycle)
squ00020

Module
squ_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:squ00020]
squ_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:squ00020]
squ_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:squ00020]
squ_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:squ00020]
squ_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:squ00020]
Other DBs
GO: 0006099
Organism
Serratia quinivorans [GN:squ]
Gene
E4343_09950  citrate synthase [KO:K01647] [EC:2.3.3.1]
E4343_02840  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E4343_20335  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E4343_06015  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E4343_09925  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E4343_09920  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E4343_16920  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4343_20330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4343_09910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E4343_09915  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E4343_09935  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E4343_09930  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E4343_09945  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
E4343_09940  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
E4343_14585  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
E4343_14590  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
E4343_14595  frdC; fumarate reductase subunit FrdC [KO:K00246]
E4343_14600  frdD; fumarate reductase subunit FrdD [KO:K00247]
E4343_20255  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E4343_04795  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E4343_14315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E4343_08525  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
E4343_17675  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E4343_05715  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E4343_20320  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E4343_20325  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E4343_03200  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
squ00010  Glycolysis / Gluconeogenesis
squ00053  Ascorbate and aldarate metabolism
squ00061  Fatty acid biosynthesis
squ00071  Fatty acid degradation
squ00190  Oxidative phosphorylation
squ00220  Arginine biosynthesis
squ00250  Alanine, aspartate and glutamate metabolism
squ00280  Valine, leucine and isoleucine degradation
squ00350  Tyrosine metabolism
squ00470  D-Amino acid metabolism
squ00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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