KEGG   PATHWAY: srhs00020
Entry
srhs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella rhizosphaerae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srhs00020  Citrate cycle (TCA cycle)
srhs00020

Module
srhs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srhs00020]
srhs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srhs00020]
srhs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srhs00020]
srhs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srhs00020]
srhs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srhs00020]
Other DBs
GO: 0006099
Organism
Shewanella rhizosphaerae [GN:srhs]
Gene
K0I63_08450  citrate synthase [KO:K01647] [EC:2.3.3.1]
K0I63_17680  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K0I63_08010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K0I63_14270  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
K0I63_08475  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K0I63_08480  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K0I63_17705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K0I63_08490  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K0I63_08485  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K0I63_08465  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K0I63_08470  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K0I63_08455  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
K0I63_08460  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K0I63_01710  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
K0I63_01715  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
K0I63_01700  fumarate reductase cytochrome b subunit [KO:K25996]
K0I63_01705  fumarate reductase cytochrome b subunit [KO:K25996]
K0I63_16090  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
K0I63_09840  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K0I63_00330  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K0I63_04475  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K0I63_18780  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K0I63_17715  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K0I63_17710  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srhs00010  Glycolysis / Gluconeogenesis
srhs00053  Ascorbate and aldarate metabolism
srhs00061  Fatty acid biosynthesis
srhs00071  Fatty acid degradation
srhs00190  Oxidative phosphorylation
srhs00220  Arginine biosynthesis
srhs00250  Alanine, aspartate and glutamate metabolism
srhs00280  Valine, leucine and isoleucine degradation
srhs00350  Tyrosine metabolism
srhs00470  D-Amino acid metabolism
srhs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system